sci-astronomy/funtools: Version bum

Some cleanup of really unused version.
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=536630

Package-Manager: portage-2.2.27

9 files changed, 70 insertions, 1586 deletions

diff --git a/sci-astronomy/funtools/Manifest b/sci-astronomy/funtools/Manifest
index 3e5326a94fdf..ea1b1e439ac6 100644
--- a/sci-astronomy/funtools/Manifest
+++ b/sci-astronomy/funtools/Manifest
@@ -1 +1 @@
-DIST funtools-1.4.4.tar.gz 3475367 SHA256 f47a00e774b557931a7ff00ddd0852e32ae5d2a2f0d3a227f8ba81d3db1e863b SHA512 3a58ad008bc33836109327add15eabaf95e9dc3f9e70a678fe9a8176dae87ccf0faf439e775b6efcb50e536afb022b9e4c226cbb98e56997960380e06012b5c2 WHIRLPOOL 5b89cb7280a4e1087c13103a813e9220432419215d8bc7e6463f5f08f2a5ba3731e7693f16d79ff4ec705665809cc33e81dbd36cd07a00d786aac35bbb975f71
+DIST funtools-1.4.6.tar.gz 3104626 SHA256 902d55682fb57a387311eef1ad2953ddc081ecea3a32ab6153ad50e7b4822c49 SHA512 0ff70649c60337faa247e38e4dc40252b0092db39fe22b2869a764d01b2d7f1c584980ab891bf6e97c66edda3a0ad4b70bc588f2c9df392d87797795b8b22413 WHIRLPOOL 26f5ca1ea34c10503e9023df05a1f1a1f8ae34e5b261a9d0a87923a2de0935e8b5ce4baf24906604cda29e59ace54f180182d86d5a0a065c6c84b84bef629aae
diff --git a/sci-astronomy/funtools/files/funtools-1.4.4-ds9-fixes.patch b/sci-astronomy/funtools/files/funtools-1.4.4-ds9-fixes.patch
deleted file mode 100644
index 6a089159d4d3..000000000000
--- a/sci-astronomy/funtools/files/funtools-1.4.4-ds9-fixes.patch
+++ /dev/null
@@ -1,292 +0,0 @@
-Origin: http://hea-www.harvard.edu/saord/download/ds9/source/ds9.7.0.tar.gz
-Description: Fixes that were applied to the package included in the saods9 
- source. Only the patches that affect the Debian distribution are included here.
- These patches are not specific for DS9, however.
- .
- From the changelog:
-  * Fixed -J funcone, which was not properly outputting all rows.
-  * Fixed bug in funim.c which broke vcol functionality.
- .
---- a/filter/filter.c
-+++ b/filter/filter.c
-@@ -326,24 +326,31 @@ Filter FilterOpen(header, string, mode)
-   }
- 
-   /* determine which type of process execution we do */
--  filter->ptype = DEFAULT_FILTER_PTYPE;
--  *tbuf = '\0';
--  if( (s=(char *)getenv("FILTER_PTYPE")) ){
--    strcpy(tbuf, s);
--  }
--  if( !*tbuf && (s=xstrdup(filter->mode)) ){
--    keyword(s, "ptype", tbuf, SZ_LINE);
--    if( s ) xfree(s);
--  }
--  if( *tbuf ){
--    if( *tbuf == 'p' )
--      filter->ptype = PTYPE_PROCESS;
--    else if( *tbuf == 'c' )
--      filter->ptype = PTYPE_CONTAINED;
-+  switch(filter->method){
-+  case METHOD_C:
-+    filter->ptype = DEFAULT_FILTER_PTYPE;
-+    *tbuf = '\0';
-+    if( (s=(char *)getenv("FILTER_PTYPE")) ){
-+      strcpy(tbuf, s);
-+    }
-+    if( !*tbuf && (s=xstrdup(filter->mode)) ){
-+      keyword(s, "ptype", tbuf, SZ_LINE);
-+      if( s ) xfree(s);
-+    }
-+    if( *tbuf ){
-+      if( *tbuf == 'p' )
-+	filter->ptype = PTYPE_PROCESS;
-+      else if( *tbuf == 'c' )
-+	filter->ptype = PTYPE_CONTAINED;
- #ifdef USE_DL
--    else if( *tbuf == 'd' )
--      filter->ptype = PTYPE_DYNAMIC;
-+      else if( *tbuf == 'd' )
-+	filter->ptype = PTYPE_DYNAMIC;
- #endif
-+    }
-+    break;
-+  default:
-+    filter->ptype = PTYPE_PROCESS;
-+    break;
-   }
- 
-   /* determine region paint mode */
-@@ -470,7 +477,10 @@ Filter FilterOpen(header, string, mode)
-   if( !FilterProgCompile(filter) )
-     goto error;
- 
--  if( filter->debug < 2 ){
-+  if( filter->debug >= 2 ) goto done;
-+
-+  switch(filter->method){
-+  case METHOD_C:
-     switch(filter->ptype){
-     case PTYPE_PROCESS:
-     case PTYPE_CONTAINED:
-@@ -478,7 +488,7 @@ Filter FilterOpen(header, string, mode)
-       case PIPE_WIN32:
- #if HAVE_CYGWIN
- 	if( !WinProcessOpen(filter->prog, 
--	    &(filter->ihandle), &(filter->ohandle), &(filter->process)) )
-+	     &(filter->ihandle), &(filter->ohandle), &(filter->process)) )
- 	  goto error;
- #else
- 	gerror(stderr, "internal error: no WinProcess without Windows");
-@@ -487,20 +497,23 @@ Filter FilterOpen(header, string, mode)
- 	break;
-       default:
- 	if( !ProcessOpen(filter->prog, 
--		    &(filter->ichan), &(filter->ochan), &(filter->pid)) )
-+	     &(filter->ichan), &(filter->ochan), &(filter->pid)) )
- 	  goto error;
- 	break;
-       }
-       break;
- #ifdef USE_DL
-     case PTYPE_DYNAMIC:
--     if( !(filter->dl=DLOpen(filter->prog)) )
--       goto error;
--     break;
-+      if( !(filter->dl=DLOpen(filter->prog)) )
-+	goto error;
-+      break;
- #endif
-     default:
--      goto error;
-+	goto error;
-     }
-+    break;
-+  default:
-+    goto error;
-   }
- 
-   /* return the good news */
---- a/filter/filt.l
-+++ b/filter/filt.l
-@@ -871,6 +871,26 @@ compass     { BEGIN COMM; }
-  *
-  */
- 
-+
-+#ifdef YY_USE_PROTOS
-+static void floatprefix(void)
-+#else
-+static void floatprefix()
-+#endif
-+{
-+  if( filt->method == METHOD_C )
-+    _FiltLexCat("(double)");
-+}
-+
-+#ifdef YY_USE_PROTOS
-+static void floatsuffix(void)
-+#else
-+static void floatsuffix()
-+#endif
-+{
-+  return;
-+}
-+
- #ifdef YY_USE_PROTOS
- static void
- bin2num(char *d, char *s, int maxlen)
-@@ -1414,7 +1434,14 @@ static void _FiltLexRegionStart(docols)
-     FilterSymbolDefaults(filt, 0);
-     /* initialize wcs for default image case */
-     _FiltLexWcsCols(filt->fhd, filt->xbin, filt->ybin);
--    _FiltLexCat(",(double)x,(double)y");
-+    _FiltLexCat(",");
-+    floatprefix();
-+    _FiltLexCat("x");
-+    floatsuffix();
-+    _FiltLexCat(",");
-+    floatprefix();
-+    _FiltLexCat("y");
-+    floatsuffix();
-     break;
-   case 1:
-     if( !initbindefs ){
-@@ -1427,16 +1454,24 @@ static void _FiltLexRegionStart(docols)
-     if( !filt->xbin || !filt->ybin ){
-       _filterror("two binning columns are required for regions");
-     }
--    _FiltLexCat(",(double)");
-+    _FiltLexCat(",");
-+    floatprefix();
-     _FiltLexCat(filt->xbin);
--    _FiltLexCat(",(double)");
-+    floatsuffix();
-+    _FiltLexCat(",");
-+    floatprefix();
-     _FiltLexCat(filt->ybin);
-+    floatsuffix();
-     break;
-   case 2:
--    _FiltLexCat(",(double)");
-+    _FiltLexCat(",");
-+    floatprefix();
-     _FiltLexCat(colnames[0]);
--    _FiltLexCat(",(double)");
-+    floatsuffix();
-+    _FiltLexCat(",");
-+    floatprefix();
-     _FiltLexCat(colnames[1]);
-+    floatsuffix();
-     break;
-   }
-   if( s ) xfree(s);
---- a/filter/filtprog_c.c
-+++ b/filter/filtprog_c.c
-@@ -198,7 +198,8 @@ static int FilterProgOpen_C(filter)
-     ccstr = "gcc";
-   }
-   /* make sure we have a compiler */
--  if( !(filter->cc = Find(ccstr, "x", NULL, FilterPath()))		&&
-+  if( !(filter->cc = Access(ccstr, "x"))				&&
-+      !(filter->cc = Find(ccstr, "x", NULL, FilterPath()))		&&
-       !(filter->cc = Find("gcc", "x", NULL, FilterPath()))		&&
-       !(filter->cc = Find("cc",  "x", NULL, FilterPath()))		&&
-       !(filter->cc = Find("cc",  "x", NULL, "."))  			&&
-@@ -212,6 +213,9 @@ static int FilterProgOpen_C(filter)
- #if HAVE_CYGWIN
-   if( (s=strrchr(filter->cc, '/')) ){
-     s++;
-+  }
-+  else if( (s=strrchr(filter->cc, '\\')) ){
-+    s++;
-   } else {
-     s = filter->cc;
-   }
---- a/funcone.c
-+++ b/funcone.c
-@@ -1036,6 +1036,9 @@ main(argc, argv)
-   strncpy(decstr, argv[optind+ioff++], SZ_LINE-1);
-   strncpy(radstr, argv[optind+ioff++], SZ_LINE-1);
- 
-+  /* dolimfilt does not work with doall */
-+  if( doall ) dolimfilt = 0;
-+
-   /* process list arguments */
-   if( dolist ){
-     if( !(list=OpenList(lname, rastr, decstr, radstr)) ){
-@@ -1085,6 +1088,8 @@ main(argc, argv)
-     if( !(adbuf=xcalloc(nrow+1, sizeof(char))) ){
-       gerror(stderr, "can't allocate all (-J|-X) buffer of size %d\n", nrow);
-     }
-+    /* must read one event at a time, or else we can't tell the event num */
-+    maxrow = 1;
-   }
- 
-   /* activate columns specified by user, if necessary */
-@@ -1371,7 +1376,7 @@ done:
-     while( (ebuf = (Ev)FunTableRowGet(fun, NULL, maxrow, NULL, &got)) ){
-       /* if we have a filter, then we don't know the row number til after
- 	 we read the event, i.e. now */
--      if( doall & ALL_FILT ) FunInfoGet(fun, FUN_ROW, &irow, 0);
-+      FunInfoGet(fun, FUN_ROW, &irow, 0);
-       /* process all rows */
-       for(i=0; i<got; i++){
- 	/* skip rows that already were written out */
---- a/funtab.c
-+++ b/funtab.c
-@@ -1386,7 +1386,7 @@ int FunTableRowPut(fun, rows, nrow, idx, plist)
- off_t
- FunTableRowSeek(Fun fun, int nrow, char *plist)
- #else
--off_t FunTableRowPut(fun, nrow, plist)
-+off_t FunTableRowSeek(fun, nrow, plist)
-      Fun fun;
-      int nrow;
-      char *plist;
---- a/funim.c
-+++ b/funim.c
-@@ -111,9 +111,9 @@ static void *_FunTableBin(fun, buf, plist)
-   /* optional value column for binning */
-   if( fun->vbin >= 0 ){
-     dovcol = 1;
--    voffset = fun->header->table->col[fun->bin[2]].offset;
--    vsize = fun->header->table->col[fun->bin[2]].size;
--    vtype = fun->header->table->col[fun->bin[2]].type;
-+    voffset = fun->header->table->col[fun->vbin].offset;
-+    vsize = fun->header->table->col[fun->vbin].size;
-+    vtype = fun->header->table->col[fun->vbin].type;
-   }
-   else{
-     dovcol = 0;
---- a/calc.l
-+++ b/calc.l
-@@ -284,7 +284,7 @@ static char *_CalcCB(name, client_data)
- {
-   CalcCols cur;  
-   char tbuf[SZ_LINE];
--  char tbuf2[SZ_LINE];
-+  char tbuf2[SZ_LINE*2];
-   char tbuf3[SZ_LINE];
-   int i, got, ip;
-   
---- a/util/gio.c
-+++ b/util/gio.c
-@@ -2209,7 +2209,7 @@ void gerror(va_alist) va_dcl
-     vsnprintf(_gerrors, SZ_LINE-1, tbuf, args);
-     /* if the error flag is positive, we output immediately */
-     if( (fd != NULL) && _gerror ){
--      fprintf(fd, _gerrors);
-+      fputs(_gerrors, fd);
-       fflush(fd);
-     }
-     /* if the error flag is set high, we exit */
-@@ -2281,7 +2281,7 @@ void gwarning(va_alist) va_dcl
-     vsnprintf(_gwarnings, SZ_LINE-1, tbuf, args);
-     /* if the warning flag is positive, we output immediately */
-     if( (fd != NULL) && _gwarning ){
--      fprintf(fd, _gwarnings);
-+      fputs(_gwarnings, fd);
-       fflush(fd);
-     }
- }
diff --git a/sci-astronomy/funtools/files/funtools-1.4.4-fix-autoheader.patch b/sci-astronomy/funtools/files/funtools-1.4.4-fix-autoheader.patch
deleted file mode 100644
index 700408057ba9..000000000000
--- a/sci-astronomy/funtools/files/funtools-1.4.4-fix-autoheader.patch
+++ /dev/null
@@ -1,121 +0,0 @@
-Author: Ole Streicher <debian@liska.ath.cx>
-Description: Fix the AC_DEFINE lines so that autoheader (and therefore 
- dh_autoreconf) works
---- a/configure.ac
-+++ b/configure.ac
-@@ -193,7 +193,7 @@ AC_MSG_RESULT($fun_ok)
- 
- SC_PATH_TCLCONFIG
- if test x"${no_tcl}" = x ; then
--    AC_DEFINE(HAVE_TCL)
-+    AC_DEFINE([HAVE_TCL], [1], [Define if tcl is used.])
- fi
- 
- AC_PROG_AWK
-@@ -218,7 +218,7 @@ POST="|\& cat"
- case $host_os in
-     *cygwin*|*Cygwin* )
-         CFLAGS="$CFLAGS -enable-auto-import"
--        AC_DEFINE(HAVE_CYGWIN)
-+        AC_DEFINE([HAVE_CYGWIN], [], [Define if the cygwin compiler is used.])
-         AC_MSG_RESULT(flagging Cygwin)
- 	PRE="sh -c {"
- 	POST="}"
-@@ -226,7 +226,7 @@ case $host_os in
-     *mingw32*|*Mingw32*)
-         CFLAGS="$CFLAGS -mconsole"
- 	EXTRA_LIBS="$EXTRA_LIBS -lwsock32"
--        AC_DEFINE(HAVE_MINGW32)
-+        AC_DEFINE([HAVE_MINGW32], [], [Define if the mingw32 compiler is used.])
-         AC_MSG_RESULT(flagging MinGW)
-         ;;
-     *osf*|*Osf*)
---- a/filter/configure.ac
-+++ b/filter/configure.ac
-@@ -150,7 +150,7 @@ PRE=""
- POST="|\& cat"
- case $host_os in
-     *cygwin*|*Cygwin* )
--        AC_DEFINE(HAVE_CYGWIN)
-+        AC_DEFINE([HAVE_CYGWIN], [], [Define if the cygwin compiler is used.])
-         AC_MSG_RESULT(flagging Cygwin)
- 	PRE="sh -c {"
- 	POST="}"
-@@ -158,7 +158,7 @@ case $host_os in
-     *mingw32*|*Mingw32*)
-         CFLAGS="$CFLAGS -mconsole"
- 	EXTRA_LIBS="$EXTRA_LIBS -lwsock32"
--        AC_DEFINE(HAVE_MINGW32)
-+        AC_DEFINE([HAVE_MINGW32], [], [Define if the mingw32 compiler is used.])
-         AC_MSG_RESULT(flagging MinGW)
-         ;;
-     *osf*|*Osf*)
---- a/fitsy/configure.ac
-+++ b/fitsy/configure.ac
-@@ -121,7 +121,7 @@ PRE=""
- POST="|\& cat"
- case $host_os in
-     *cygwin*|*Cygwin* )
--        AC_DEFINE(HAVE_CYGWIN)
-+        AC_DEFINE([HAVE_CYGWIN], [], [Define if the cygwin compiler is used.])
-         AC_MSG_RESULT(flagging Cygwin)
- 	PRE="sh -c {"
- 	POST="}"
-@@ -129,7 +129,7 @@ case $host_os in
-     *mingw32*|*Mingw32*)
-         CFLAGS="$CFLAGS -mconsole"
- 	EXTRA_LIBS="$EXTRA_LIBS -lwsock32"
--        AC_DEFINE(HAVE_MINGW32)
-+        AC_DEFINE([HAVE_MINGW32], [], [Define if the mingw32 compiler is used.])
-         AC_MSG_RESULT(flagging MinGW)
-         ;;
-     *darwin*|*Darwin*)
---- a/util/configure.ac
-+++ b/util/configure.ac
-@@ -133,7 +133,7 @@ fi
- 
- SC_PATH_TCLCONFIG
- if test x"${no_tcl}" = x ; then
--    AC_DEFINE(HAVE_TCL)
-+    AC_DEFINE([HAVE_TCL], [1], [Define if tcl is used.])
- fi
- 
- AC_MSG_CHECKING(for external zlib)
-@@ -146,7 +146,7 @@ PRE=""
- POST="|\& cat"
- case $host_os in
-     *cygwin*|*Cygwin* )
--        AC_DEFINE(HAVE_CYGWIN)
-+        AC_DEFINE([HAVE_CYGWIN], [], [Define if the cygwin compiler is used.])
-         AC_MSG_RESULT(flagging Cygwin)
- 	PRE="sh -c {"
- 	POST="}"
-@@ -154,7 +154,7 @@ case $host_os in
-     *mingw32*|*Mingw32*)
-         CFLAGS="$CFLAGS -mconsole"
- 	EXTRA_LIBS="$EXTRA_LIBS -lwsock32"
--        AC_DEFINE(HAVE_MINGW32)
-+        AC_DEFINE([HAVE_MINGW32], [], [Define if the mingw32 compiler is used.])
-         AC_MSG_RESULT(flagging MinGW)
-         ;;
-     *osf*|*Osf*)
---- a/wcs/configure.ac
-+++ b/wcs/configure.ac
-@@ -125,7 +125,7 @@ PRE=""
- POST="|\& cat"
- case $host_os in
-     *cygwin*|*Cygwin* )
--        AC_DEFINE(HAVE_CYGWIN)
-+        AC_DEFINE([HAVE_CYGWIN], [], [Define if the cygwin compiler is used.])
-         AC_MSG_RESULT(flagging Cygwin)
- 	PRE="sh -c {"
- 	POST="}"
-@@ -133,7 +133,7 @@ case $host_os in
-     *mingw32*|*Mingw32*)
-         CFLAGS="$CFLAGS -mconsole"
- 	EXTRA_LIBS="$EXTRA_LIBS -lwsock32"
--        AC_DEFINE(HAVE_MINGW32)
-+        AC_DEFINE([HAVE_MINGW32], [], [Define if the mingw32 compiler is used.])
-         AC_MSG_RESULT(flagging MinGW)
-         ;;
-     *osf*|*Osf*)
diff --git a/sci-astronomy/funtools/files/funtools-1.4.4-fix-crashes.patch b/sci-astronomy/funtools/files/funtools-1.4.4-fix-crashes.patch
deleted file mode 100644
index 75d69089ef13..000000000000
--- a/sci-astronomy/funtools/files/funtools-1.4.4-fix-crashes.patch
+++ /dev/null
@@ -1,99 +0,0 @@
-Author: Ole Streicher <debian@liska.ath.cx>
-Description: Check cmd line arguments for illegal input that caused crashes
- found with the "Mayhem" tool.
-Bug: http://bugs.debian.org/715928
-Bug: http://bugs.debian.org/715929
---- a/funjoin.c
-+++ b/funjoin.c
-@@ -737,7 +737,7 @@ main(argc, argv)
-       case 'a':
- 	if( argv[i][2] ){
- 	  j = atoi(&argv[i][2])-1;
--	  if( (j >= 0) && (j < MAXIFILE) ){
-+	  if( (j >= 0) && (j < MAXIFILE) && (i < argc-1)){
- 	    files[j].actstr = argv[++i];
- 	  }
- 	  else{
-@@ -751,7 +751,7 @@ main(argc, argv)
-       case 'b':
- 	if( argv[i][2] ){
- 	  j = atoi(&argv[i][2])-1;
--	  if( (j >= 0) && (j < MAXIFILE) ){
-+	  if( (j >= 0) && (j < MAXIFILE) && (i < argc-1)){
- 	    files[j].bstr = argv[++i];
- 	  }
- 	  else{
-@@ -765,7 +765,7 @@ main(argc, argv)
-       case 'j':
- 	if( argv[i][2] ){
- 	  j = atoi(&argv[i][2])-1;
--	  if( (j >= 0) && (j < MAXIFILE) ){
-+	  if( (j >= 0) && (j < MAXIFILE) && (i < argc-1)){
- 	    files[j].jname = argv[++i];
- 	  }
- 	  else{
-@@ -773,25 +773,35 @@ main(argc, argv)
- 	  }
- 	}
- 	else{
--	  defcol = argv[++i];
-+          if (i < argc-1) {
-+	    defcol = argv[++i];
-+	  }
- 	}
- 	break;
-       case 'm':
--	minmatch = atoi(argv[++i])+1;
-+        if (i < argc-1) {
-+	  minmatch = atoi(argv[++i])+1;
-+	}
- 	if( minmatch < 1 ) minmatch = 1;
- 	break;
-       case 'M':
--	maxmatch = atoi(argv[++i])+1;
-+        if (i < argc-1) {
-+	  maxmatch = atoi(argv[++i])+1;
-+	}
- 	if( maxmatch < 1 ) maxmatch = 1;
- 	break;
-       case 's':
- 	jfiles = JFILES_COL;
- 	break;
-       case 'S':
--	jfiles = argv[++i];
-+        if (i < argc-1) {
-+	  jfiles = argv[++i];
-+	}
- 	break;
-       case 't':
--	tol = atof(argv[++i]);
-+        if (i < argc-1) {
-+	  tol = atof(argv[++i]);
-+	}
- 	if( tol <= 0 ){
- 	  gerror(stderr, "tolerance value must be positive\n");
- 	}
---- a/funimage.c
-+++ b/funimage.c
-@@ -338,12 +338,16 @@ main(argc, argv)
-     t = strchr(s, ',');
-     strncat(newname, s, t-s);
-     strncat(newname, ",y:", SZ_LINE-strlen(newname));
--    s = ++t;
--    t = strchr(s, ',');
--    strncat(newname, s, t-s);
-+    if (t != NULL) {
-+      s = ++t;
-+      t = strchr(s, ',');
-+      strncat(newname, s, t-s);
-+    }
-     strncat(newname, "),", SZ_LINE-strlen(newname));
--    s = ++t;
--    strncat(newname, s, SZ_LINE-strlen(newname));
-+    if (t != NULL) {
-+	s = ++t;
-+	strncat(newname, s, SZ_LINE-strlen(newname));
-+    }
-     iname = newname;
-   }
- 
diff --git a/sci-astronomy/funtools/files/funtools-1.4.4-fix-hardening.patch b/sci-astronomy/funtools/files/funtools-1.4.4-fix-hardening.patch
deleted file mode 100644
index 2f24268d74f2..000000000000
--- a/sci-astronomy/funtools/files/funtools-1.4.4-fix-hardening.patch
+++ /dev/null
@@ -1,68 +0,0 @@
-Author: Ole Streicher <debian@liska.ath.cx>
-Description: Fix the format string for fprintf
---- a/gnu/sort.c
-+++ b/gnu/sort.c
-@@ -2775,7 +2775,7 @@
- 		xfwrite (buf, 1, cc, ofp);
- 	      if (ferror (fp))
- 		{
--		  fprintf (stderr, files[i]);
-+  	          fprintf (stderr, "%s", files[i]);
- 		  cleanup ();
- 		  exit (2);
- 		}
---- a/Makefile.in
-+++ b/Makefile.in
-@@ -137,7 +137,7 @@
- 
- CC  =		@CC@
- 
--CC_SWITCHES =	-I. ${CFLAGS} @USE_DL@ ${INCLUDES} ${AC_FLAGS}
-+CC_SWITCHES =	-I. ${CFLAGS} ${CPPFLAGS} @USE_DL@ ${INCLUDES} ${AC_FLAGS}
- 
- DEPEND_SWITCHES = -I. ${CFLAGS} ${INCLUDES} ${AC_FLAGS}
- 
---- a/filter/Makefile.in
-+++ b/filter/Makefile.in
-@@ -114,7 +114,7 @@
- 
- CC =		@CC@
- 
--CC_SWITCHES =	-I. ${CFLAGS} -DFILT_VERSION="\"$(VERSION)\"" @USE_DL@ \
-+CC_SWITCHES =	-I. ${CFLAGS} ${CPPFLAGS} -DFILT_VERSION="\"$(VERSION)\"" @USE_DL@ \
- 		${INCLUDES} ${AC_FLAGS}
- 
- DEPEND_SWITCHES = -I. ${CFLAGS} -I. ${INCLUDES} ${AC_FLAGS}
---- a/gnu/Makefile.in
-+++ b/gnu/Makefile.in
-@@ -87,7 +87,7 @@
- 
- CC =		@CC@
- 
--CC_SWITCHES =	${CFLAGS} ${INCLUDES} ${AC_FLAGS}
-+CC_SWITCHES =	${CFLAGS} ${CPPFLAGS} ${INCLUDES} ${AC_FLAGS}
- 
- DEPEND_SWITCHES = ${CFLAGS} ${INCLUDES} ${AC_FLAGS}
- 
---- a/util/Makefile.in
-+++ b/util/Makefile.in
-@@ -105,7 +105,7 @@
- 
- CC =		@CC@
- 
--CC_SWITCHES =	-I. ${CFLAGS} @USE_DL@ ${INCLUDES} ${AC_FLAGS}
-+CC_SWITCHES =	-I. ${CFLAGS} ${CPPFLAGS} @USE_DL@ ${INCLUDES} ${AC_FLAGS}
- 
- DEPEND_SWITCHES = -I. ${CFLAGS} ${INCLUDES} ${AC_FLAGS}
- 
---- a/mklib
-+++ b/mklib
-@@ -169,7 +169,7 @@
-             rm -f ${LIBNAME}.so
- 
-             # make lib
--            ${LINK} ${OPTS} -o ${LIBNAME}.so.${VERSION} ${OBJECTS} ${DEPS}
-+            ${LINK} ${LDFLAGS} ${OPTS} -o ${LIBNAME}.so.${VERSION} ${OBJECTS} ${DEPS}
-             # make usual symlinks
-             ln -s ${LIBNAME}.so.${VERSION} ${LIBNAME}.so.${MAJOR}
-             ln -s ${LIBNAME}.so.${MAJOR} ${LIBNAME}.so
diff --git a/sci-astronomy/funtools/files/funtools-1.4.4-fix-includes.patch b/sci-astronomy/funtools/files/funtools-1.4.4-fix-includes.patch
deleted file mode 100644
index 4068ace7f810..000000000000
--- a/sci-astronomy/funtools/files/funtools-1.4.4-fix-includes.patch
+++ /dev/null
@@ -1,602 +0,0 @@
-Author: Ole Streicher <debian@liska.ath.cx>
-Description: The include files are going to be installed in 
- /usr/include/funtools. So, they should refer to each other by using ""  
- instead of <> which also searches in the current directory.
---- a/filter/column.h
-+++ b/filter/column.h
-@@ -12,14 +12,14 @@
- #define	__column_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #ifdef HAVE_STRING_H
- #include <string.h>
- #endif
- 
--#include <prsetup.h>
-+#include "prsetup.h"
- _PRbeg
- 
- void ColumnLoad _PRx((char *ibuf, int size, int n, int convert, void *obuf));
---- a/filter/dl.h
-+++ b/filter/dl.h
-@@ -2,14 +2,14 @@
- #define	__dl_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #ifdef HAVE_DLFCN_H
- #include <dlfcn.h>
- #endif
- 
--#include <prsetup.h>
-+#include "prsetup.h"
- 
- _PRbeg
- 
---- a/filter/filter.h
-+++ b/filter/filter.h
-@@ -12,7 +12,7 @@
- #define	__filter_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- /* avoid use of system -- its not secure */
-@@ -34,28 +34,28 @@
- #include <string.h>
- #endif
- #include <sys/types.h>
--#include <prsetup.h>
--#include <gio.h>
--#include <file.h>
--#include <find.h>
--#include <macro.h>
--#include <word.h>
--#include <xalloc.h>
--#include <strtod.h>
-+#include "prsetup.h"
-+#include "gio.h"
-+#include "file.h"
-+#include "find.h"
-+#include "macro.h"
-+#include "word.h"
-+#include "xalloc.h"
-+#include "strtod.h"
- #define USE_XFILEIO 1
--#include <fitsy.h>
-+#include "fitsy.h"
- #undef USE_XFILEIO
--#include <idx.h>
--#include <wcs.h>
--#include <column.h>
--#include <tl.h>
--#include <dl.h>
--#include <mkrtemp.h>
--#include <zprocess.h>
--#include <winprocess.h>
--#include <parse.h>
-+#include "idx.h"
-+#include "wcs.h"
-+#include "column.h"
-+#include "tl.h"
-+#include "dl.h"
-+#include "mkrtemp.h"
-+#include "zprocess.h"
-+#include "winprocess.h"
-+#include "parse.h"
- #ifdef USE_LAUNCH
--#include <xlaunch.h>
-+#include "xlaunch.h"
- #endif
- 
- #ifndef OBJPATH
---- a/filter/idx.h
-+++ b/filter/idx.h
-@@ -11,9 +11,9 @@
- #define	__idx_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
--#include <prsetup.h>
-+#include "prsetup.h"
- #include <stdio.h>
- #include <ctype.h>
- #ifdef HAVE_UNISTD_H
-@@ -22,10 +22,10 @@
- #ifdef HAVE_STRING_H
- #include <string.h>
- #endif
--#include <fitsy.h>
--#include <gio.h>
--#include <xalloc.h>
--#include <strtod.h>
-+#include "fitsy.h"
-+#include "gio.h"
-+#include "xalloc.h"
-+#include "strtod.h"
- 
- /* binary search edge */
- #define IDX_EDGE_LEFT  1
---- a/filter/tl.h
-+++ b/filter/tl.h
-@@ -11,7 +11,7 @@
- #ifndef	__tl_h
- #define	__tl_h
- 
--#include <prsetup.h>
-+#include "prsetup.h"
- 
- _PRbeg
- 
---- a/fitsy/fitsy.h
-+++ b/fitsy/fitsy.h
-@@ -5,13 +5,13 @@
- #define FITSY_H
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #if USE_XFILEIO
--#include <xfileio.h>
-+#include "xfileio.h"
- #else
--#include <xfile.h>
-+#include "xfile.h"
- #endif
- 
- #ifdef __STDC__
-@@ -30,7 +30,7 @@
- 
- #include <ctype.h>
- 
--#include <longlong.h>
-+#include "longlong.h"
- 
- #ifndef NULL
- #define NULL	0
---- a/funtools.h
-+++ b/funtools.h
-@@ -27,11 +27,11 @@
- #define FUN_VERSION "1.4.4"
- 
- #ifndef FUNTOOLS_PRIVATE
--#include <prsetup.h>
-+#include "prsetup.h"
- #define USE_XFILEIO 1
--#include <fitsy.h>
-+#include "fitsy.h"
- #undef USE_XFILEIO
--#include <wcs.h>
-+#include "wcs.h"
- typedef void *Fun;
- #endif
- 
---- a/funtoolsP.h
-+++ b/funtoolsP.h
-@@ -12,7 +12,7 @@
- #define	__funtoolsP_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #include <stdio.h>
-@@ -32,20 +32,20 @@
- #include <getopt.h>
- #endif
- #include <sys/types.h>
--#include <prsetup.h>
-+#include "prsetup.h"
- #define USE_XFILEIO 1
--#include <fitsy.h>
-+#include "fitsy.h"
- #undef USE_XFILEIO
--#include <wcs.h>
--#include <filter.h>
--#include <file.h>
--#include <swap.h>
--#include <word.h>
--#include <parse.h>
--#include <xalloc.h>
--#include <mkrtemp.h>
--#include <NaN.h>
--#include <xlaunch.h>
-+#include "wcs.h"
-+#include "filter.h"
-+#include "file.h"
-+#include "swap.h"
-+#include "word.h"
-+#include "parse.h"
-+#include "xalloc.h"
-+#include "mkrtemp.h"
-+#include "NaN.h"
-+#include "xlaunch.h"
- 
- #ifndef MAXINT
- #define MAXINT	2147483647
-@@ -338,6 +338,6 @@ int FunView _PRx((Fun fun, char *view, char *vmode, char *fname, int fmax));
- 
- _PRend
- 
--#include <funtools.h>
-+#include "funtools.h"
- 
- #endif /* __funtoolsP.h */
---- a/ofuntools.h
-+++ b/ofuntools.h
-@@ -27,11 +27,11 @@
- #define FUN_VERSION "1.4.4"
- 
- #ifndef FUNTOOLS_PRIVATE
--#include <prsetup.h>
-+#include "prsetup.h"
- #define USE_XFILEIO 1
--#include <fitsy.h>
-+#include "fitsy.h"
- #undef USE_XFILEIO
--#include <wcs.h>
-+#include "wcs.h"
- typedef void *Fun;
- #endif
- 
---- a/util/NaN.h.in
-+++ b/util/NaN.h.in
-@@ -20,7 +20,7 @@
- #ifndef	__nan_h
- #define	__nan_h
- 
--#include <prsetup.h>
-+#include "prsetup.h"
- 
- #define BIGENDIAN @BIGENDIAN@
- 
---- a/util/file.h
-+++ b/util/file.h
-@@ -12,7 +12,7 @@
- #define	__file_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #include <stdio.h>
-@@ -28,9 +28,9 @@
- #endif
- #include <sys/types.h>
- #include <sys/stat.h>
--#include <prsetup.h>
--#include <macro.h>
--#include <xalloc.h>
-+#include "prsetup.h"
-+#include "macro.h"
-+#include "xalloc.h"
- 
- _PRbeg
- int FileExists _PRx((char *filename));
---- a/util/find.h
-+++ b/util/find.h
-@@ -12,7 +12,7 @@
- #define	__find_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #include <stdio.h>
-@@ -25,8 +25,8 @@
- #endif
- #include <sys/types.h>
- #include <sys/stat.h>
--#include <xalloc.h>
--#include <prsetup.h>
-+#include "xalloc.h"
-+#include "prsetup.h"
- 
- _PRbeg
- 
---- a/util/gio.h
-+++ b/util/gio.h
-@@ -11,10 +11,10 @@
- #ifndef _gio_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
--#include <xport.h>
-+#include "xport.h"
- 
- #include <stdio.h>
- #ifdef HAVE_STRING_H
-@@ -46,8 +46,8 @@
- #include <sys/stat.h>
- #include <sys/time.h>
- 
--#include <prsetup.h>
--#include <xalloc.h>
-+#include "prsetup.h"
-+#include "xalloc.h"
- 
- /* use ftello/fseeko (assuming its available) if we are using 64-bit offsets */
- #if _FILE_OFFSET_BITS == 64
---- a/util/macro.h
-+++ b/util/macro.h
-@@ -12,7 +12,7 @@
- #define	__macro_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #include <stdio.h>
-@@ -26,7 +26,7 @@
- #ifdef HAVE_STDLIB_H
- #include <stdlib.h>
- #endif
--#include <prsetup.h>
-+#include "prsetup.h"
- 
- typedef char *(*MacroCall)(
- #ifdef ANSI_FUNC
---- a/util/mainlib.h
-+++ b/util/mainlib.h
-@@ -12,7 +12,7 @@
- #define	__mainlib_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- #ifdef HAVE_STRING_H
- #include <string.h>
-@@ -29,11 +29,11 @@
- #include <stdio.h>
- #include <errno.h>
- #include <sys/types.h>
--#include <prsetup.h>
--#include <xalloc.h>
--#include <word.h>
--#include <find.h>
--#include <gio.h>
-+#include "prsetup.h"
-+#include "xalloc.h"
-+#include "word.h"
-+#include "find.h"
-+#include "gio.h"
- 
- /* types of mainlibs we recognize */
- #define MAINLIB_ERROR 0
---- a/util/mkrtemp.h
-+++ b/util/mkrtemp.h
-@@ -12,7 +12,7 @@
- #define	__mkrtemp_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #include <sys/types.h>
-@@ -31,9 +31,9 @@
- #ifdef HAVE_STDLIB_H
- #include <stdlib.h>
- #endif
--#include <prsetup.h>
--#include <word.h>
--#include <xalloc.h>
-+#include "prsetup.h"
-+#include "word.h"
-+#include "xalloc.h"
- 
- #ifdef __APPLE__
- #define lrand48  random
---- a/util/parse.h
-+++ b/util/parse.h
-@@ -12,7 +12,7 @@
- #define	__parse_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- 
- #include <stdio.h>
-@@ -33,12 +33,12 @@
- #endif
- #include <ctype.h>
- 
--#include <prsetup.h>
--#include <strtod.h>
--#include <xalloc.h>
--#include <word.h>
--#include <gio.h>
--#include <longlong.h>
-+#include "prsetup.h"
-+#include "strtod.h"
-+#include "xalloc.h"
-+#include "word.h"
-+#include "gio.h"
-+#include "longlong.h"
- 
- #define PARSE_DEBUG 1
- #if PARSE_DEBUG
---- a/util/strtod.h
-+++ b/util/strtod.h
-@@ -11,7 +11,7 @@
- #ifndef	__strtod_h
- #define	__strtod_h
- 
--#include <prsetup.h>
-+#include "prsetup.h"
- 
- extern int SAOdtype;
- 
---- a/util/swap.h
-+++ b/util/swap.h
-@@ -11,7 +11,7 @@
- #ifndef	__swap_h
- #define	__swap_h
- 
--#include <prsetup.h>
-+#include "prsetup.h"
- 
- /* data types */
- #define TY_CHAR		1
---- a/util/tclmainlib.h
-+++ b/util/tclmainlib.h
-@@ -1,4 +1,4 @@
--#include <mainlib.h>
-+#include "mainlib.h"
- 
- #if HAVE_TCL
- 
---- a/util/winprocess.h
-+++ b/util/winprocess.h
-@@ -13,7 +13,7 @@
- #define	__winprocess_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- #include <stdio.h>
- #ifdef HAVE_UNISTD_H
-@@ -25,7 +25,7 @@
- #ifdef HAVE_STDLIB_H
- #include <stdlib.h>
- #endif
--#include <prsetup.h>
-+#include "prsetup.h"
- 
- #if defined(HAVE_CYGWIN) || defined(WIN32)
- 
---- a/util/word.h
-+++ b/util/word.h
-@@ -12,7 +12,7 @@
- #define	__word_h
- 
- #if HAVE_CONFIG_H
--#include <conf.h>
-+#include "conf.h"
- #endif
- #ifdef HAVE_STRING_H
- #include <string.h>
-@@ -23,8 +23,8 @@